Available Tools

Built and maintained by EuropaDX as a free companion to EuropaXp OmicsCloud.

FreeBetaVolcano plot icon

Volcano Plot

Interactive differential expression visualization with configurable fold-change and p-value/FDR thresholds.

Differential expressionRNA-seqProteomics
Open Tool
FreeBetaVenn diagram icon

Venn Diagram

Analyze overlap across up to four sets with intersection members, statistics, and export to PNG or SVG.

Set overlapGene listsUpSet view
Open Tool
FreeBetaHeatmap icon

Heatmap

Create clustered heatmaps from expression matrices with normalization, dendrograms, and high-resolution export.

ClusteringVisualizationMulti-omics
Open Tool
FreeBetaPathway enrichment icon

ORA / Pathway Enrichment

Run over-representation analysis against GO, Hallmark, Reactome, and WikiPathways with corrected p-values and export-ready dot plots.

EnrichmentPathwaysGO / Hallmark
Open Tool
FreeBetaMA plot icon

MA Plot

Visualize log-ratio versus mean expression to assess intensity-dependent fold changes and quality control patterns. Optional LOESS curve for normalization bias detection.

Differential expressionQCRNA-seq
Open Tool
FreeBetaPCA biplot icon

PCA Biplot

Interactive principal component analysis with scores, loadings, scree plot, group coloring, and 95% confidence ellipses. Publication-ready PNG and SVG export.

PCADimensionality reductionMulti-omics
Open Tool
FreeBetaBox and violin plot icon

Box / Violin Plot

Grouped box and violin plots with overlaid points, t-test, Wilcoxon, Mann-Whitney, and ANOVA. Covers the "give me a figure with p-values" use case.

StatisticsGroup comparisonQCPublication figure
Open Tool
FreeBetaqPCR analysis icon

qPCR Analysis

Drop a raw QuantStudio, Bio-Rad CFX, LightCycler, or Rotor-Gene export, auto-detect the format, and get relative quantification (2^-ΔΔCt or Pfaffl), QC flags, statistics, a figure, and a one-click report.

qPCRRT-qPCRRelative quantificationReport
Open Tool
Coming SoonKaplan-Meier curve icon

Kaplan-Meier Curve

Survival curves with at-risk tables, log-rank p-values, and hazard ratios. Upload time-to-event data and get a publication figure.

Survival analysisClinicalStatisticsOncology
Coming SoonUMAP and t-SNE plotter icon

UMAP / t-SNE Plotter

Nonlinear dimensionality reduction for single-cell and high-dimensional omics. Interactive zoom, group coloring, and label overlay.

Single-cellDimensionality reductionscRNA-seqClustering
Coming SoonGSEA preranked icon

GSEA Preranked

Gene Set Enrichment Analysis on a preranked gene list. Running enrichment scores, leading edge subsets, and corrected p-values.

EnrichmentPathwayGene setsGSEA
Coming SoonCorrelation matrix icon

Correlation Matrix

Sample-sample or feature-feature correlation heatmap with Pearson, Spearman, or Kendall. Optional hierarchical clustering and significance overlay.

CorrelationQCClusteringMulti-omics

About This Toolkit

These tools are designed for researchers who need fast and reliable exploratory analysis without local software setup. Data processing runs directly in your browser.

Looking for a full workflow with collaboration, reproducibility, and end-to-end pipelines? Explore EuropaXp OmicsCloud.

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